Dr. Noël Malod-Dognin
Research Fellow
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Research       Ph.D.       Publications       Software       Teaching       Contact


Journal Publications: 16, Total Impact (using 2016 IFs): 142.172



J16. JIB Omics data complementarity underlines functional cross-communication in yeast
N. Malod-Dognin and N. Pržulj
Journal of Integrative Bioinformatics 14(3), 2017. Also Conference paper C10. [doi]
Impact Factor: 0.926 (from SJR)

J15. ScientificReports Unified Alignment of Protein-Protein Interaction Networks
N. Malod-Dognin, K. Ban and N. Pržulj
Scientific Reports 7:953, 2017. [pdf] [doi]
Impact Factor: 4.259

J14. Bioinformatics Rebuttal to the Letter to the Editor in response to the paper: Proper evaluation of alignment-free network comparison methods
O.N. Yaveroğlu, N. Malod-Dognin, T. Milenković and N. Pržulj
Bioinformatics 33(7):1107-1109, 2017. [pdf] [doi]
Impact Factor: 7.307

J13. ScientificReports Graphlet-based Characterization of Directed Networks
A. Sarajlić, N. Malod-Dognin, O.N. Yaveroğlu and N. Pržulj
Scientific Reports 6:35098, 2016. [pdf] [doi]
Impact Factor: 4.259

J12. A global genetic interaction network maps a wiring diagram of cellular function
M. Costanzo, B. VanderSluis, E. N. Koch, A. Baryshnikova, C. Pons, G. Tan, W. Wang, M. Usaj, J. Hanchard, S. D. Lee, V. Pelechano, E. B. Styles, M. Billmann, J. van Leeuwen, N. van Dyk, Z.-Y. Lin, E. Kuzmin, J. Nelson, J. S. Piotrowski, T. Srikumar, S. Bahr, Y. Chen, R. Deshpande, C. F. Kurat, S. C. Li, Z. Li, M. M. Usaj, H. Okada, N. Pascoe, B.-J. San Luis, S. Sharifpoor, E. Shuteriqi, S. W. Simpkins, J. Snider, H. G. Suresh, Y. Tan, H. Zhu, N. Malod-Dognin, V. Janjic, N. Pržulj, O. G. Troyanskaya, I. Stagljar, T. Xia, Y. Ohya, A.-C. Gingras, B. Raught, M. Boutros, L. M. Steinmetz, C. L. Moore, A. P. Rosebrock, A. A. Caudy, C. L. Myers, B. Andrews and C. Boone
Science 353(6306):aaf1420, 2016. [pdf] [doi]
Impact Factor: 37.205

J11. Science Network Analytics in the age of Big Data
N. Pržulj and N. Malod-Dognin
Science 353(6295):aah3449, 2016. [pdf] [doi]
Impact Factor: 37.205

J10. Proteomics Integrative Methods for Analysing Big Data in Precision Medicine
V. Gligorijević, N. Malod-Dognin and N. Pržulj
Proteomics 16(15):741-758, 2016. [pdf] [doi]
Impact Factor: 4.041

J9. Bioinformatics FUSE: Multiple Network Alignment via Data Fusion
V. Gligorijević, N. Malod-Dognin and N. Pržulj
Bioinformatics 32(8):1195-1203, 2016. [pdf] [doi]
Impact Factor: 7.307

J8. Bioinformatics L-GRAAL: Lagrangian Graphlet-based Network Aligner
N. Malod-Dognin and N. Pržulj
Bioinformatics 31(13):2182-2189, 2015. [pdf] [doi]
Impact Factor: 7.307

J7. Bioinformatics Topology-Function Conservation in Protein-Protein Interaction Networks
D. Davis, O.N. Yaveroğlu, N. Malod-Dognin, A. Stojmirovic and N. Pržulj
Bioinformatics 31(10):1632-1639, 2015. [pdf] [doi]
Impact Factor: 7.307

J6. ScientificReports Revealing the Hidden Language of Complex Networks
O.N. Yaveroğlu, N. Malod-Dognin, D. Davis, Z. Levnajic, V. Janjic, R. Karapandza, A. Stojmirovic and N. Pržulj
Scientific Reports 4:4547, 2014. [pdf] [doi]
Impact Factor: 4.259

J5. Bioinformatics GR-Align: Fast and Flexible Alignment of Protein 3D Structures Using Graphlet Degree Similarity
N. Malod-Dognin and N. Pržulj
Bioinformatics 30(9):1259-1265, 2014. [pdf] [doi]
Impact Factor: 7.307

J4. ProteinsSFB Characterizing the Morphology of Protein Binding Patches
N. Malod-Dognin, A. Bansal and F. Cazals
Proteins: structure, function, and bioinformatics 80(12):2652-2665, 2012. [pdf] [doi]
Impact Factor: 2.289

J3. nucleic-acid-research CSA: Comprehensive comparison of pairwise structural protein alignments
I. Wohlers, N. Malod-Dognin, R. Andonov and G.W. Klau
Nucleic Acids Research 40(W1):W303-W309, 2012. [pdf] [doi]
Impact Factor: 10.162

J2. JCB Maximum Contact Map Overlap Revisited
R. Andonov, N. Malod-Dognin and N. Yanev
Journal of Computational Biology 18(1):27-41, 2011. [pdf] [doi]
Impact Factor: 1.032

J1. Serdica Solving Maximum Clique Problem for Protein Structure Similarity
N. Malod-Dognin, R. Andonov and N. Yanev
Serdica Journal of Computing 4(1):93-100, 2010. [pdf]






Conference Publications: 10

C10.
IB'17
Omics data complementarity underlines functional cross-communication in yeast
N. Malod-Dognin and N. Pržulj
Proceedings of the International Symposium on Integrative Bioinformatics, 2017. Also journal publication J16.

C9.
PSB'16
Patient-Specific Data Fusion for Cancer Stratification and Personalized Treatment
V. Gligorijević, N. Malod-Dognin and N. Pržulj
Proceedings of the 21st Pacific Symposium on Biocomputing, p. 321-332, 2016. [pdf]

C8.
JOBIM'12
CSA : Comparaison compréhensible d'alignement de paires de structures de protéines
I. Wohlers, N. Malod-Dognin, R. Andonov, G.W. Klau
Proceedings of JOBIM, p.201-208, 2012 (in french).

C7.
PRIB'11
Shape Matching by Localized Calculations of Quasi-isometric Subsets, with Applications to the Comparison of Protein Binding Patches
F. Cazals and N. Malod-Dognin
Pattern Recognition in Bioinformatics, Lecture Notes in Computer Science, vol. 7036, p. 272-283, 2011. [pdf] [doi] [bib]

C6.
WABI'11
Using Dominances for Solving the Protein Family Identification Problem
N. Malod-Dognin, M. Le Boudic-Jamin, P. Kamath, and R. Andonov
Algorithms in Bioinformatics, Lecture Notes in Computer Science, vol. 6833, p. 201-212, 2011. [pdf] [doi] [bib]

C5.
ROADEF'11
Identification rapide de familles protéiques par dominance
M. Le Boudic-Jamin, N. Malod-Dognin, A. Cornu, J. Nicolas and R. Andonov
Proceedings of the 12th Annual Congress of the French National Society of Operations Research and Decision Science (ROADEF), vol. 2, p.791-792, 2011 (in french).

C4.
SHREC'10
SHREC-10 Track: Protein Model Classification
L. Mavridis, V. Venkatraman, D. W. Ritchie, N. Morikawa, R. Andonov, A. Cornu, N. Malod-Dognin, J. Nicolas, M. Temerinac-Ott, M. Reisert, H. Burkhardt, A. Axenopoulos and P. Daras
Eurographics Workshop on 3D Object Retrieval (3DOR), p. 117-124, 2010. [pdf] [bib]

C3.
SEA'10
Maximum Clique in Protein Structure Comparison
N. Malod-Dognin, R. Andonov and N. Yanev
Experimental Algorithms, Lecture Notes in Computer Science, vol. 6049, p.106-117, 2010. [pdf] [doi] [bib]

C2.
WABI'08
An Efficient Lagrangian Relaxation for the Contact Map Overlap Problem
R. Andonov, N. Yanev and N. Malod-Dognin
Algorithms in Bioinformatics, Lecture Notes in Computer Science, vol. 5251, p. 162-173, 2008. [pdf] [doi] [bib]

C1.
ROADEF'08
Modèle de PLNE pour la recherche de cliques de poids maximal
N. Malod-Dognin, R. Andonov, N. Yanev and J-F. Gibrat
Proceedings of the 9th Annual Congress of the French National Society of Operations Research and Decision Science (ROADEF), p. 307-308, 25/02/2008 (In french).






Refereed Posters: 14

14.
ISMB/ECCB'17
Ulign: Unified Alignment of Protein-Protein Interaction Networks
N. Malod-Dognin, K. Ban and N. Pržulj
ISMB-ECCB, Prague, Czech Republic, July 21-25, 2017.

13.
ISMB/ECCB'17
Hypergraphlets Give Insight into Multi-Scale Organisation of Molecular Networks
T. Gaudelet, N. Malod-Dognin, J. Lugo-Martinez, P. Radivojac and N. Pržulj
ISMB-ECCB, Prague, Czech Republic, July 21-25, 2017.

12.
ISMB/ECCB'17
A network analysis of the incidence pattern of microcephaly in the context of Zika Virus Infection
M.P. Cifuentes, C.M. Suarez, S.F.L. Windels, R. Cifuentes, N. Doogan, J.F. Valderrama, N. Malod-Dognin, D. Hood and N. Pržulj
ISMB-ECCB, Prague, Czech Republic, July 21-25, 2017.

11.
PSB'16
Patient-Specific Data Fusion for Cancer Stratification and Personalized Treatment
V. Gligorijević, N. Malod-Dognin and N. Pržulj
Pacific Symposium on Biocomputing, Big Island, Hawaii, January 4-8, 2016.

10.
ISMB-ECCB'15
FUSE: Multiple Network Alignment via Data Fusion
V. Gligorijević, N. Malod-Dognin and N.Pržulj
ISMB-ECCB, Dublin, Ireland, July 10-14, 2015.

9.
ECCB'14
L-GRAAL: Lagrangian Graphlet-based Network Aligner
N. Malod-Dognin and N. Pržulj
ECCB, Strasbourg, France, September 7-10, 2014.

8.
ECCB'14
Topology-Function Conversion in Protein-Protein Interaction Networks
D. Davis, O.N. Yaveroğlu, N. Malod-Dognin, A. Stojmirovic and N. Pržulj
ECCB, Strasbourg, France, September 7-10, 2014.

6-7.
ISMB-ECCB'13
3Dsig'13
GrAlign: Fast Flexible Alignment of Protein 3D Structures
N. Malod-Dognin and N. Pržulj
ISMB-ECCB, Berlin, Germany, July 21-23, 2013.
3Dsig, Berlin, Germany, July 19-20, 2013.

5.
GTBio'12
On the Stoichiometry Determination Problem for Mass Spectrometry Data
D. Agarwal, N. Malod-Dognin and F. Cazals
GTBio; Montpellier, France, April 3-6, 2012.

2-4.
GTBio'12
GGMM'11
PRIB'11
On the Morphology of Protein Binding Patches
N. Malod-Dognin and F.Cazals
GTBio; Montpellier, France, April 3-6, 2012.
The 17th GGMM congress; La Rochelle, France, May 30 to June 1, 2011.
PRIB; Delft, The Netherlands, November 2-4, 2011. Best poster award

1.
ESF-EMBO'10
Protein Structure Comparison: A Generic Framework
N. Malod-Dognin, R. Andonov and N. Yanev
ESF-EMBO Symposium on Molecular Perspectives on Protein-Protein Interactions; Sant Feliu de Guixols, Spain, November 14-19, 2010.